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Cloning and functional analysis of the VdERD6L15 gene and promoter in Vitis davidii

Date:2024/7/26 15:01:42 Visit:

Abstract :ObjectiveVitis davidii Foëx is a key wild grape germplasm resource in southern China , the sugars in the Vitis davidii fruits are mainly accumulated in the form of glucose and fructose in the vacuole during the ripening period, and this process is mainly regulated by sugar transporter proteins. The Early-Response to Dehydration six-like (ERD6L) is a subfamily of Monosaccharide Transporters (MSTs), which has been proved as a key regular in soluble sugar homeostasis. In this study, to investigate the role of VdERD6L15 gene in the growth and development of Vitis davidii fruits, the coding sequence (CDS) and promoter of VdERD6L15 gene were cloned from Xiangci No.1, and its function and promoter activity were further analyzed.MethodsThe Pearson correlation coefficients and FDR values of the expression data of VdERD6LI5 gene and the soluble sugar content were calculated using the R packages GGally and ggplot2. The CDS of the VdERD6LI5 gene was cloned by reverse transcription-polymerase chain reaction (RT-PCR), and the sequence was biologically analyzed by ExPasY, TMHMM2.0, and SWISS-MODEL website. After constructing the VdERD6L15 related expression vector, tobacco was transformed to determine the subcellular localization of VdERD6L15, heterologous expression of VdERD6L15 was observed in yeast strain EBY.VW4000 to determine its function, and the core region of VdERD6L15 promoter was determined by GUS staining.ResultsBased on the Pearson correlation analysis of VdERD6L15 gene expression and sugar content, it was found that the expression of VdERD6LI5 was high in the early stage of fruit development and low in the later stage, which was significantly negatively correlated with the soluble sugar accumulation in the fruit of Vitis davidii. The cDNA from the root tissues of Vitis davidii was used as a templateprimers were designed by Oligo7 website, and the PCR amplification was performed. Sequence analysis showed that the length of the CDS of the VdERD6L15 gene was 1,461 bp in length, encoding 486 amino acids and belonging to the Monosaccharide Transporter (MST) family. Analysis by ExPASy online website predicted that the protein encoded by VdERD6L15 has a relative molecular weight of 52,614.73, theoretical isoelectric point of 8.34, fat coefficient of 118.91, and average coefficient of hydrophilicity of 0.628, and it is a class of unstable protein. The results of TMHMM online software analysis indicated that VdERD6L15 may contain 12 transmembrane structural domains, and it was hypothesized that VdERD6L15 is a membrane protein. SOPMA online software to predict the secondary structure of the VdERD6L15 protein, the results showed that the protein is mainly composed of α- Spiral 49.18%, β Corner 3.10, extended chains are 18.11%, and irregular curls are 26.54%. The prediction of the tertiary structure of this protein was carried out by SWISS-MODEL online software. Observation by Confocal laser scanning microscope revealed that the GFP-VdERD6L15 protein is a membrane protein and has a typical vesicular membrane invagination structure, whereas RFP-SYP122-labeled cellular membranes do not have invaginations, indicating that VdERD6L15 was localized to the tonoplast. The heterologous expression of the VdERD6L15 gene in hexose-deficient yeast strain EBY.VW4000 preliminarily found that the yeast strain transformed with pDR196 null load could grow normally on maltose medium, and failed to grow normally on glucose, fructose, and sucrose medium; The yeast strain transformed with pDR196-VdERD6L15 grew well on glucose-containing medium, while growth was obviously inhibited on fructose and sucrose medium, confirmed that VdERD6L15 was involved in glucose transport. PlantCARE website was used to analyze and predict the cis-acting elements in the promoter of VdERD6L15, the result shown that the promoter contained mainly light response components, drought stress and hormone response components. The results by GUS staining experiments showed that the P1 (-3000bp), P2 (-2200bp), P3 (-1500bp) and P4 (-1000bp) transformed tobacco leaves in the experimental group could be stained normally, and only tobacco leaves transfected with P5 (-500bp) could not be stained normally, which further confirmed that the core region on the promoter of the VdERD6L15 was located between -500bp to -1000bp.ConclusionIn this study, the CDS and promoter of VdERD6L15 gene was cloned and its function was analyzed, and it was preliminarily found that VdERD6L15 is a sugar transporter located on the tonoplast and harbors the glucose transportation function. Through promoter deletion analysis of the VdERD6L15, it was found that the core cis-acting element of the VdERD6L15 promoter is located between 500bp and 1000bp upstream of the ATG.



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